#XXX blueprint file #input setting popid: XXX # id of the population (no white space) nseq: XX # number of sequences L: 1234895725 # total number of observed nucleic sites, including polymorphic and monomorphic whether_folded: true # whethr the SFS is folded (true or false) SFS: XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX XXX.XXX # snp frequency spectrum: number of singleton, number of doubleton, etc. (separated by white space) #smallest_size_of_SFS_bin_used_for_estimation: 1 # default is 1; to ignore singletons, uncomment this line and change this number to 2 #largest_size_of_SFS_bin_used_for_estimation: 17 # default is nseq/2 for folded SFS pct_training: 0.67 # percentage of sites for training nrand: (nseq-2)/4 (nseq-2)/2 (nseq-2)*3/4 nseq-2 # number of random break points for each try (separated by white space) project_dir: /path/to/XXX/ # project directory stairway_plot_dir: /path/to/stairway_plot_v2.1.1/stairway_plot_es # directory to the stairway plot files ninput: 200 # number of input files to be created for each estimation #random_seed: 6 #output setting mu: XXXe-X # assumed mutation rate per site per generation year_per_generation: XXX # assumed generation time (in years) #plot setting plot_title: demo_XXX # title of the plot xrange: 0.1,10000 # Time (1k year) range; format: xmin,xmax; "0,0" for default yrange: 0,0 # Ne (1k individual) range; format: xmin,xmax; "0,0" for default xspacing: 2 # X axis spacing yspacing: 2 # Y axis spacing fontsize: 12 # Font size